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From: PREETA DATTA (preita_datta_at_yahoo.com)
Date: Tue Feb 20 2007 - 07:22:53 CST
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Note: forwarded message attached.
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attached mail follows:
Hello,
I am working on bilayers and have newly started using VMD.I am facing the following problem :
I have generated a POPC bilayer using 'membrane' plugin in VMD.I have got the corresponding .pdb and .psf files, using VMD.Those files are CHARMM compatible.
Now , I wish to run MD simulations for this bilayer in AMBER using CHARMM forcefield.
I cannot create the CHARMM coordinate and topology files using VMD.
Is it possible to create AMBER compatible topology and coordinate files (from these pdb and psf files I have) ?
Any help in this regard would be highly appreciated.
Thanks,
Preeta
(Project Assisstant,
Indian Institute of Science)
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