VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Sep 08 2006 - 13:13:23 CDT

Hi,
  The built-in Ramachandran plot tool will only display a plot for one
molecule at a time, but you could either modify it, or use
"$sel get {phi psi}" to query the angles and write them to files or
some other combination. So while it isn't a built-in feature, it is
certainly possible to do this with a little bit of work.

  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Sep 08, 2006 at 12:43:32PM -0500, Rathinavelan, Thenmalarchelvi wrote:
>
> Hi,
> I like to get the Ramachandran plot of 2 pdb files in same graph, viz. superposing two ramachandran plots. Can you please tell me whether it is possible to do it using VMD.
>
> Thank you,
> Thenmalar 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078