VMD-L Mailing List

From: Vineet Pande (pande.vin_at_gmail.com)
Date: Sat Jun 03 2006 - 10:58:02 CDT

Yes. even if use "nucleic not solvent" or "all not solvent" selection while
displaying in *default display*; VMD does not show the molecule completely.

Vineet 

---
Vineet Pande, Ph.D.
Karolinska Institute, Stockholm
On 6/2/06, Leonardo G. Trabuco <ltrabuco_at_ks.uiuc.edu> wrote:
>
> On Fri, Jun 02, 2006 at 04:17:51PM +0200, Vineet Pande wrote:
> > Hi,
> > I am using VMD for WIN32, version 1.8.4b10 to display a simple CHARMM
> > trajectory of a nucleic acid duplex. However, in the graphics, I can't
> see
> > one of the terminal nucleotides in both the strands; the MD movie runs
> fine
> > however. What could be the problem?
>
> Are you using the keyword 'nucleic' in your atom selection? Which
> representation are you using?
>
> Leo
>
> --
> Leonardo Giantini Trabuco
> Ph.D. candidate
> Center for Biophysics and Computational Biology
> University of Illinois at Urbana-Champaign
>