VMD-L Mailing List

From: Leandro Martínez (leandromartinez98_at_gmail.com)
Date: Sat Apr 22 2006 - 16:07:56 CDT

No, Molden has a function to automatically build a whole peptide given
the sequence. It is very simple, is not like building other
structures, which would certainly be tedious.
Leandro.

On 4/22/06, dimka <newyorkdimka_at_gmail.com> wrote:
> Molden is great for adding/modifying small chemical groups. Building
> an 11-residue fragment will be very tedious. I'd use Modeler for
> rebuilding the fragment.
>
> -d
>
> On 4/22/06, Leandro Martínez <leandromartinez98_at_gmail.com> wrote:
> > Molden does that.
> > Leandro.
> >
> >
> >
> > -------------------------------------------
> > Leandro Martinez
> > Institute of Chemistry
> > State University of Campinas
> > http://www.ime.unicamp.br/~martinez/packmol
> > -------------------------------------------
> >
> > On 4/21/06, John Robinson <johnmrobinson_at_mac.com> wrote:
> > > Can anyone recommend free software that enables one build a peptide
> > > fragment into a pdb structure that has an 11 residue void.
> > >
> > > Thanks,
> > >
> > > --John
> > > --------------------------------------------
> > > John M. Robinson, M.D., Ph.D.
> > > mailto:johnmrobinson_at_mac.com
> > >
> > >
> > >
> >
> >
>
>