VMD-L Mailing List

From: Guanglei Cui (cuigl_at_psu.edu)
Date: Thu Aug 25 2005 - 10:19:55 CDT

Hi,

I'm trying to use VMD to write AMBER trajectory (crdbox). But I found
the box dimension isn't actually written in the resulted file. The
dimension is all zeros. Can anyone confirm on that? Here is what I did:

mol1 = molecule.load("parm7", "prmtop", "crdbox", "mdcrd")
molecule.write(mol1, "crdbox", "output")

BTW, molecule.get_periodic did return non-zero box dimensions. Thank you.

Regards, 

--
Guanglei