VMD-L Mailing List

From: Vermaas, Josh (vermaasj_at_msu.edu)
Date: Mon Sep 11 2023 - 09:00:34 CDT

Have you looked at the dynamic bond representation?

-Josh

From: <owner-vmd-l_at_ks.uiuc.edu> on behalf of Joel Subach <mjsubach_at_alumni.ncsu.edu>
Date: Sunday, September 10, 2023 at 9:36 AM
To: "vmd-l_at_ks.uiuc.edu" <vmd-l_at_ks.uiuc.edu>
Subject: vmd-l: Viewing Van der Waals bonds of a protein ligand in complex inquiry

Hello, does VMD contain an algorithm to view possible Van der Waals bonds
between a protein and ligand via a click or must each be measured manually?
If the latter, what would be the best procedure to do this?

Thanks:)
Joel 🚀