VMD-L Mailing List

From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue Apr 05 2022 - 13:52:31 CDT

Hi, keep the mailing list copied, so that any specific help may be reused
by others.

XYZ files can mean a lot of different things depending on what software
wrote them. For the sake of VMD, refer to this page for the correct format:
https://www.ks.uiuc.edu/Research/vmd/plugins/molfile/xyzplugin.html

Giacomo

On Tue, Apr 5, 2022 at 2:47 PM Eric Ledieu <evledieu_at_uark.edu> wrote:

> I think there might be another error, then. I am reinstalling VMD, but it
> did not read my .xyz prior to this plugin, as getting it to do so was why I
> installed the VMD store plugin
> ------------------------------
> *From:* Giacomo Fiorin <giacomo.fiorin_at_gmail.com>
> *Sent:* Tuesday, April 5, 2022 1:21 PM
> *To:* Eric Ledieu <evledieu_at_uark.edu>
> *Cc:* vmd-l_at_ks.uiuc.edu <vmd-l_at_ks.uiuc.edu>
> *Subject:* Re: vmd-l: error 1114 when loading plugins
>
> Hi, the standard distribution of VMD already reads XYZ files, without need
> to load additional plugins.
>
> If you need something that is only provided by an external plugin like VMD
> store, and its installation fails, you should contact their maintainers
> first.
>
> Giacomo
>
> On Tue, Apr 5, 2022 at 2:02 PM Eric Ledieu <evledieu_at_uark.edu> wrote:
>
> I am trying to view a xyz file, so I got the VMD plugin manager VMD store.
> it claimed to be done with installation and needed a restart, so I did so.
> Now, when I boot it up, it is listing a whole series of things it was
> unable to load, including the XYZ plugin. I think it was most likely
> already there but had less to load. any assistance is appreciated. here is
> the log in full, but the error it gives is 1114 in all cases.
>
> Info) VMD for WIN64, version 1.9.4a51 (December 21, 2020)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> <https://urldefense.com/v3/__https://nam11.safelinks.protection.outlook.com/?url=http*3A*2F*2Fwww.ks.uiuc.edu*2FResearch*2Fvmd*2F&data=04*7C01*7Cevledieu*40uark.edu*7C30c82f90cf5d41fefda608da173145da*7C79c742c4e61c4fa5be89a3cb566a80d1*7C0*7C0*7C637847797762754505*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C2000&sdata=yIepvSC1KM6wSWJwRPpIXdMZn9xcHaHY*2F8*2FjYEkPN3A*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSUl!!DZ3fjg!qYUldhI7OP8ATuQsLF5U_vnAKKFsRINeZI-xgGmSKd978zYl0h-mtY7t7tOu3zR9Rg$ >
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 12 CPUs detected.
> Info) CPU features: SSE2 SSE4.1 AVX AVX2 FMA F16 HT
> Info) Free system memory: 26GB (81%)
> Info) No CUDA accelerator devices available.
> Info) OpenGL renderer: GeForce GTX 960/PCIe/SSE2
> Info) Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVFGS)
> Info) Full GLSL rendering mode is available.
> Info) Textures: 2-D (16384x16384), 3-D (2048x2048x2048), Multitexture (4)
> Info) No joysticks found. Joystick interface disabled.
> Info) Detected 1 available TachyonL/OptiX ray tracing accelerator
> Info) Compiling OptiX shaders on 1 target GPU...
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so
> Info) Dynamically loaded 57 plugins in directory:
> Info) C:/Program Files/VMD/plugins/WIN64/molfile
> The irspecgui package could not be loaded:
>
> The multiseq package could not be loaded:
>
> The networkview package could not be loaded:
>
> The pmepot_gui package could not be loaded:
>
> The autoionizegui package could not be loaded:
>
> The solvate package could not be loaded:
>
> The autopsf package could not be loaded:
>
> The cggui package could not be loaded:
>
> The dowser_gui package could not be loaded:
>
> The chirality_gui package could not be loaded:
>
> The cispeptide_gui package could not be loaded:
>
> The forcefieldtoolkit package could not be loaded:
>
> The mdff_gui package could not be loaded:
>
> The membrane package could not be loaded:
>
> The membranemixer package could not be loaded:
>
> The mergestructs package could not be loaded:
>
> The molefacture package could not be loaded:
>
> The mutator package could not be loaded:
>
> The alascan package could not be loaded:
>
> The autoimd package could not be loaded:
>
> The qwikmd package could not be loaded:
>
>