VMD-L Mailing List

From: Seera Suryanarayana (palusoori_at_gmail.com)
Date: Mon Mar 22 2021 - 02:02:18 CDT

Dear VMD users,

I have a small peptide of 20 residue length and I would like to do the
simulations of this peptide at different starting points. How could one can
generate the different starting points? Can I use the replica exchange MD
simulations to generate the different starting points? I request you to
please suggest me how to generate different starting points of peptide.

Thanks in advance
Surya
Graduate student
India.