VMD-L Mailing List
From: Deng, Jinxia (Nancy) (jinxianancy.deng_at_zoetis.com)
Date: Tue Mar 01 2016 - 09:03:27 CST
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Hi All,
I have a simple membrane system with water on both sides. The MD trajectory of 50ns (by NAMD) shows the membrane keep moving slowly till top of the unicell.
I played with the pbc plugin, trying various combinations including unwrap and join etc... But still could not keep membrane in its central position as I want.
I am wondering whether anyone would like to share with me your step-wise pbc combinations...
Looking forward to hearing from you.
Nancy
- Next message: Bylund, Tatsiana (NIH/NIAID) [F]: "visualizing MDFF results with explicit solvent"
- Previous message: Greipel.Joachim_at_mh-hannover.de: "vmd and proxy settings"
- Next in thread: Norman Geist: "AW: pbc to keep membrane in center"
- Reply: Norman Geist: "AW: pbc to keep membrane in center"
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