VMD-L Mailing List
From: Ramin Ekhteiari (ramin_ekh_at_yahoo.com)
Date: Tue Apr 01 2014 - 08:24:33 CDT
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Hi,
I would like to generate psf file for a dimer protein (i.e., chain A and B).
I tried this tcl commands ,
package require psfgen
topology top_all36_prot.rtf
topology top_all36_cgenff.rtf
pdbalias residue HIS HSE
pdbalias atom ILE CD1 CD
segment U {pdb protein.pdb}
coordpdb protein.pdb U
guesscoord
writepdb test.pdb
writepsf test.psf
But the it generates only for one chain not more.
Would you please advise me on how to do it for both chains.
Would be grateful for any help.
Cheers,
Ramin.
- Next message: Josh Vermaas: "Re: generatei psf file for a dimer protein"
- Previous message: Norman Geist: "AW: Assigning different temperatures in the same simulaiton"
- Next in thread: Josh Vermaas: "Re: generatei psf file for a dimer protein"
- Reply: Josh Vermaas: "Re: generatei psf file for a dimer protein"
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