VMD-L Mailing List

From: Kim, Kwiseon (kwiseon_kim_at_nrel.gov)
Date: Fri Feb 13 2004 - 16:51:33 CST

 In the Graphics Representations window
  type
  "not water"
 in the space below Selected Atoms.

--- I never thought there would be a question
 I could answer in vmd-l :-)

Kwiseon

> -----Original Message-----
> From: Bamidele Adisa [mailto:badisa_at_CLEMSON.EDU]
> Sent: Friday, February 13, 2004 3:03 PM
> To: vmd-l_at_ks.uiuc.edu
> Subject: vmd-l: removing surrounding water molecules
>
>
> hi,
> i want to view the trajectory of a phenylacetylene oligomer
> solvated in a
> box of water.
> but because there are so many water molecules surrounding the
> oligomer,
> it's almost impossible to see what's
> going on to the oligomer, which is located at the center of
> the box of water.
> is possible to remove the surrounding water molecules in vmd
> so i can view
> the oligomer clearly?
> thanks in advance,
> dele
>
> ______________________
> Dept of Chemical Engineering
> Clemson University
> Clemson, SC 29634-0909
> ______________________
>