VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Oct 27 2003 - 15:50:51 CST

Hi,
  You can use the "ramaplot" tool in the "extensions" menu to make
Ramachandran plots. Just select the molecule you want to plot, and
it will draw it interactively. You can also select the plotted points
to see what parts of your structure they correspond to.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Oct 27, 2003 at 01:26:36PM -0500, Madhuri Agashe wrote:
> Can I use VMD to get Ramachandran plots? How?
>
> Madhuri Agashe
> Graduate Research Assistant,
> Dept. of Bioengineering,
> Clemson University,
> Clemson, SC 29631
> Phone: 864-653-4230 (resi)
> 864-656-1352 (off.)
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078