VMD-L Mailing List

From: Chirag Vora (chirag740_at_gmail.com)
Date: Tue Apr 24 2012 - 00:04:09 CDT

Hi, I loaded my Desmond trajectories to VMD. When I visualize the
simulation, I see the protein runs out of the water box. How do I center
all atoms?

In schrodinger's maestro there is a function "center atoms". Is there an
equivalent function in VMD? How do I use it? 

-- 
Chirag V. Vora
Department of Pharmacoinformatics<http://niper.gov.in/depart.htm#Pharmacoinformatics>
,
Block - A, Bioinformatics Infrastructure Facility,
National Institute of Pharmaceutical Education and
Research<http://niper.gov.in>(NIPER)
Sector 67, S.A.S. Nagar,
Punjab (INDIA) - 160 062,
Phone: +91-9814187740