VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Fri Apr 01 2011 - 11:59:54 CDT

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On Fri, Apr 1, 2011 at 12:07 PM, Saketh Bharadwaja <sakethb_at_live.com> wrote:
> Hi,
>
> Please find attached my VMD input file spit out by LAMMPS. I have a total of
> 801 atoms with the first 400 fixed and the rest 401 moving. I want bonds to
> be created among the atoms to understand the lattice structure better and
> run the movie. Could somebody please tell me how bonds are created
> automatically. I tried creating bonds manually selecting the bonds under
> mouse tab in the VMD console but I want them to be done automatically.

it won't work fully automatically, but explanations and some suggestions
on how to make it work are given here:

http://sites.google.com/site/akohlmey/software/topotools/topotools-tutorial---part-1

axel.

>
>
>
> Regards,
>
> Saketh.

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.

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