VMD-L Mailing List
From: Gregorio Alanislobato (gregorio.alanislobato_at_kaust.edu.sa)
Date: Tue Aug 17 2010 - 16:14:46 CDT
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Thanks everyone! The problem is solved!!!
Regards,
-- Gregorio Alanís Lobato, BSc 4700 KAUST Mail Box: 1899 Thuwal 23955–6900, KSA Student ID: 100037943 Badge #: 101969 Mobile Phone: +966-564-75-14-14 e-mail: gregorio.alanislobato_at_kaust.edu.sa On 16 August 2010 23:21, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote: > On Mon, Aug 16, 2010 at 9:29 PM, Gregorio Alanislobato > <gregorio.alanislobato_at_kaust.edu.sa> wrote: > > Hi everyone, > > > > I've got two coarse grained proteins with 130 atoms each and no matter > what > > selection I type in the RMSD calculator, I obtain the message "Selection > > contains no atoms. RMSD calculation not possible". What can be wrong? > > your input. please read the documentation about atom selections > in the VMD user's guide again. keep in mind that most of the > heuristics that the selection language users, require pdb style > naming conventions, which are usually not given for any > coarse grain model. VMD doesn't know what your input > really stands for. it is only a computer program. > > axel. > > > > > Thanks again. > > > > Regards, > > -- > > Gregorio Alanís Lobato, BSc > > 4700 KAUST Mail Box: 1899 > > Thuwal 23955–6900, KSA > > Student ID: 100037943 > > Badge #: 101969 > > Mobile Phone: +966-564-75-14-14 > > e-mail: gregorio.alanislobato_at_kaust.edu.sa > > > > > > > > On 16 August 2010 14:58, Mert Gür <gurmert_at_gmail.com> wrote: > >> > >> Dear Gregorio, > >> Type "name CA" instead of "protein" in the RMSD plugin > >> Best, > >> Mert > >> > >> On Mon, Aug 16, 2010 at 8:13 PM, Gregorio Alanislobato > >> <gregorio.alanislobato_at_kaust.edu.sa> wrote: > >> > Hi, > >> > > >> > I would like to measure the RSMD between two coarse grained molecules > >> > but > >> > VMD keeps saying it is not possible. Do anyone know of a way to do > this? > >> > > >> > Thanks in advance. > >> > > >> > Regards, > >> > -- > >> > Gregorio Alanís Lobato, BSc > >> > 4700 KAUST Mail Box: 1899 > >> > Thuwal 23955–6900, KSA > >> > Student ID: 100037943 > >> > Badge #: 101969 > >> > Mobile Phone: +966-564-75-14-14 > >> > e-mail: gregorio.alanislobato_at_kaust.edu.sa > >> > > > > > > > > > > > > > -- > Dr. Axel Kohlmeyer akohlmey_at_gmail.com > http://sites.google.com/site/akohlmey/ > > Institute for Computational Molecular Science > Temple University, Philadelphia PA, USA. >
- Next message: Peter Freddolino: "Re: REMD + RBCG"
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- In reply to: Axel Kohlmeyer: "Re: RSMD of coarse grained molecules"
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