VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Aug 16 2010 - 12:57:59 CDT

Hi,
  You must ensure that both of your atom selections have exactly
the same atom count. If you select more atoms from one than from
the other, then the "measure rmsd" command will return an error.
If that isn't the source of your problem, then you'll have to be much
more specific about what error VMD is giving you so we can help you.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Aug 16, 2010 at 01:13:59PM -0400, Gregorio Alanislobato wrote:
> Hi,
>
> I would like to measure the RSMD between two coarse grained molecules but
> VMD keeps saying it is not possible. Do anyone know of a way to do this?
>
> Thanks in advance.
>
> Regards,
> --
> Gregorio Alanis Lobato, BSc
> 4700 KAUST Mail Box: 1899
> Thuwal 23955*6900, KSA
> Student ID: 100037943
> Badge #: 101969
> Mobile Phone: +966-564-75-14-14
> e-mail: gregorio.alanislobato_at_kaust.edu.sa 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
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