VMD-L Mailing List

From: rebeca (rebeca_at_mmb.pcb.ub.es)
Date: Tue Feb 16 2010 - 13:35:07 CST

Hi,
I have solved the problem with this command:

mol addfile trajectory.crd type crd

Thanks anyway!

Cheers,

Rebeca.

On Tue, 16 Feb 2010 13:12:14 -0600, John Stone <johns_at_ks.uiuc.edu> wrote:
> Hi,
> Can you tell us more specifically what error you're getting
> when you try to load the crd file from ptraj? Without more details,
> I'm afraid I can't give you any useful suggestion.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Tue, Feb 16, 2010 at 07:31:52PM +0100, rebeca wrote:
>>
>> Hi,
>> I have a NAMD/Charmm trajectory processed with ptraj.
>>
>> To open it with VMD I have to load manually the psf and the trajectory
>> selecting Amber coordinates, and there is no problem.
>>
>> However, when I want to load the trajectory using the text mode, I
write:
>>
>> mol load psf psf_file.psf
>> mol load crd trajectory.crd
>>
>> And it does not work. I have tried to delete the first line of the file
>> "trajectory.crd" that is "trajectory generated by ptraj", but it does
not
>> work either.
>>
>> Could you please tell me how could I load this trajectory using the text
>> mode of vmd?
>>
>> Thank you very much,
>>
>> Rebeca Garcia Fandino
>>
>>
>> 

-- 
Rebeca García Fandiño
Molecular Modelling and Bioinformatics Group
Institut de Reçerca Biomèdica 
Parc Cientific de Barcelona
08028 Barcelona
rebeca_at_mmb.pcb.ub.es