VMD-L Mailing List

From: Margaret S. Cheung (mscheung_at_uh.edu)
Date: Sun Sep 28 2008 - 21:04:56 CDT

Hi Alexander and VMD developer and wizards,
Thank you for the reply. Qian and I took a look at it and it still
didn't work and this issue was not resolved. Do you have other suggestions?
Thank you.
Best,
Margaret

Alexander A. Vakhrushev wrote:
> Hi Qian!
>
> Try to add after frame selection command
>
> # get the protein atoms
> set sel [atomselect $index "protein"]
> $sel frame $name
>
> following line, updating your selection
>
> $sel update
>
> 2008/9/27, qwang_at_mail.uh.edu <qwang_at_mail.uh.edu>:
>
>> Hi,
>>
>> I am using the script (sscache.tcl) to compute the secondary structures of a
>> protein in a trajectory. I follow the instructions from
>> http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/sscache/sscache.tcl.
>>
>> I wrote a tcl script as an attached and tried to execute it on a trajectory,
>> but it only showed the results of the last frame. I tried my script using
>> different modules (functions) but it looped correctly, so I am quite sure
>> that I have been including the loop correctly.
>>
>> Could you please help me take a look at this script and see if there is
>> something that I could have overlooked?
>>
>> Thank you.
>> Sincerely,
>> Qian
>>
>>
>>
>>
>
>
> 

-- 
Margaret S. Cheung
Assistant Professor
Department of Physics
629C Science and Research 1
University of Houston
Houston, TX 77204-5005
email:   mscheung_at_uh.edu
(O)713-743-8358 (F)713-743-3589
http://www.phys.uh.edu/~mscheung/