VMD-L Mailing List

From: Katherine Parra (kparra_at_mail.usf.edu)
Date: Thu Jul 17 2008 - 09:30:22 CDT

Oh! I'm sorry
I'm running the 32-bit LINUX
KP

On Thu, Jul 17, 2008 at 10:21 AM, John Stone <johns_at_ks.uiuc.edu> wrote:

>
> I should have been more specific, what precise build of VMD are
> you using, e.g.:
> Info) VMD for LINUX, version 1.8.7a30 (June 20, 2008)
>
> The key thing I'm looking for (since you already said it's 1.8.6)
> is whether you're running the 32-bit "LINUX", 64-bit "LINUXAMD64",
> etc.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Jul 17, 2008 at 10:13:14AM -0400, Katherine Parra wrote:
> > In VMD console startup:
> >
> > Refrences
> > Free System Memory
> > OpenGL renderer: GeForce2 MX/AGP/SSE2
> > Features: STENCIL MDE MTX PP PS
> > GLSL rendering mode is not available.
> > Textures: 2-D (2048x2048), 3-D (64x64x64), Multitexture (2)
> >
> > On Wed, Jul 16, 2008 at 3:19 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
> >
> > >
> > > Hi,
> > > One other item, what version of VMD 1.8.6 do you have installed?
> > > (show me the startup messages you're getting)
> > >
> > > John
> > >
> > > On Wed, Jul 16, 2008 at 03:06:06PM -0400, Katherine Parra wrote:
> > > > I downloaded pylib.linux.tar.gz<
> > >
> http://www.ks.uiuc.edu/Research/vmd/plugins/pythonlib/vmd-1.8.4/pylib.linux.tar.gz
> > > >
> > > > the library that matched the version of VMD that I'm using 1.8.6
> > > > KP
> > > >
> > > > On Wed, Jul 16, 2008 at 2:28 PM, John Stone <johns_at_ks.uiuc.edu>
> wrote:
> > > >
> > > > >
> > > > > Hi,
> > > > > Did you download the libraries that match the version of VMD
> you're
> > > using?
> > > > > (both the VMD version number, and also the right 32-bit 64-bit
> libs?)
> > > > > If you tell me the details of your installation and what you've
> > > installed
> > > > > I should be able to assist you.
> > > > >
> > > > > John Stone
> > > > > vmd_at_ks.uiuc.edu
> > > > >
> > > > > On Wed, Jul 16, 2008 at 02:16:28PM -0400, Katherine Parra wrote:
> > > > > > Dear VMD community:
> > > > > > I successfully downloaded one of the versions of python for linux
> > > from
> > > > > the
> > > > > > VMD python library, now everytime I start the python mode in the
> VMD
> > > > > console
> > > > > > I get the following error message:
> > > > > >
> > > > > > 'import site' failed; use -v for traceback
> > > > > > ImportError: No module named types or
> > > > > > ImportError: No module named numeric_version
> > > > > >
> > > > > > Besides some other messages like:
> > > > > > Could not find Numeric Python version >=22.0
> > > > > >
> > > > > > Also if I try with:
> > > > > > >>> import vmdnumpy, Numeric
> > > > > > I get:
> > > > > > ImportError: No module named vmdnumpy
> > > > > >
> > > > > > I think I've been able to change VMD console from tcl mode to
> python
> > > > > mode.
> > > > > > But I don't know if these errors could affect any script that I
> > > write.
> > > > > >
> > > > > > Thank you in advance.
> > > > > > KP
> > > > >
> > > > > --
> > > > > NIH Resource for Macromolecular Modeling and Bioinformatics
> > > > > Beckman Institute for Advanced Science and Technology
> > > > > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > > > > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > > > > WWW: http://www.ks.uiuc.edu/~johns/>
> <http://www.ks.uiuc.edu/%7Ejohns/><
> > > http://www.ks.uiuc.edu/%7Ejohns/>
> > > > > Fax: 217-244-6078
> > > > >
> > >
> > > --
> > > NIH Resource for Macromolecular Modeling and Bioinformatics
> > > Beckman Institute for Advanced Science and Technology
> > > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > > WWW: http://www.ks.uiuc.edu/~johns/><
> http://www.ks.uiuc.edu/%7Ejohns/>
> > > Fax: 217-244-6078
> > >
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ <http://www.ks.uiuc.edu/%7Ejohns/>
> Fax: 217-244-6078
>