VMD-L Mailing List

From: Irene Newhouse (einew_at_hotmail.com)
Date: Mon Feb 04 2008 - 17:56:41 CST

There may be other solutions, but Chimera is a free program which creates n-mers from monomers.
The rub is that you have to have pdb symmetry header information - it's designed to do this for
n-mers which are not explicitly included in a pdb file. See http://www.cgl.ucsf.edu/chimera/download.html I'm not sure if this will help you or not.
 
Irene Newhouse> From: swarna_at_physics.usyd.edu.au> To: vmd-l_at_ks.uiuc.edu> Subject: vmd-l: To create Tetramer> Date: Tue, 5 Feb 2008 09:42:52 +1100> > Hi> I have a chain and I want to create tetramer. I looked at the vmd mailing list > and found the following> set M {{ 1 0 0 0} {0 1 0 0} {0 0 1 0}}> set sel [atomselect top "all"]> $sel move $M> $sel writepdb AQP-x.pdb> > when I tried with this it gave the error> atomselection move:: need a 4x4 matrix> > I set M {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}> then it says badly formed matrix.> > I dont know how to do this using swiss pdbviewer too. Can anyone please help > me.> > thanks> swarna
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