VMD-L Mailing List
From: kinshuk_at_chem.iitb.ac.in
Date: Sun Oct 14 2007 - 02:21:32 CDT
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Hi all,
I am student of IIT-Bombay. I have been working in the area of de novo
protein designing.Now i have been working on solvation problem there i
have one problem i.e. i have to select water molecule at 5 Angstrong
cutt-off surrounding the peptide in simulation box.
I have been exploring VMD there i came to know about command (water
within 5 of protein) but when i have given the command it showd the
message invalid command line (water). when i wrote within 5 0f protein
it shows that invalid command line (within). i tried many times it's
all command but it is not working properly.I have been using
VMD-1.8.2.
Please help me.
- Next message: Francesco Pietra: "combine.tcl error"
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- Reply: Neelanjana Sengupta: "Re: residue selection (water molecule within 5 ang. to protein in simulation)"
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