VMD-L Mailing List

From: Justin Gullingsrud (justinrocks_at_gmail.com)
Date: Sat Nov 13 2004 - 12:25:45 CST

Hi Eric,

Could you try running the script with the latest version of VMD,
1.8.2? You can download it here:
http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

Thanks,
Justin

On Fri, 12 Nov 2004 18:20:28 -0800, Eric Peterson <eric_at_caltech.edu> wrote:
> I'm having some difficulty running the wsphere.tcl script included in the
> NAMD tutorials that puts a sphere of water around ubiquitin... The script
> gets to the point where it calls
>
> solvate $psf $pdb -o $box -minmax $minmax
>
> Which goes fine until solvate gets to this point:
>
> reading structure from psf file
> /Users/atomicpirate/Documents/Caltech/Research/bin/UIUC/VMD/VMD
> 1.8.1.app/Contents/vmd/plugins/noarch/tcl/solvate1.2/wat.psf
>
> Segmentation fault
>
> Anyone else had this problem before?
>
> Eric
>
> Powerbook G4 1.25 GHz, Mac OS 10.3.6
> VMD 1.8.1
>
> 

-- 
The spirit of Plato dies hard.  We have been unable to escape the
philosophical tradition that what we can see and measure in the world
is merely the superficial and imperfect representation of an
underlying reality.
                -- S.J. Gould, "The Mismeasure of Man"