VMD-L Mailing List

From: Chitrak Gupta (chgupta_at_mix.wvu.edu)
Date: Sat Feb 04 2017 - 19:30:12 CST

Hi Priti,

Make sure you are clicking "reply all", so the email chain could be
archived for future user (you also stand a better chance of getting help
that way).

Make sure you read and understand the documentation of Hbonds plugin (and
pretty much anything else that you use). Selection 1 and selection 2 are
explained in the documentation. The "molecule" is the molecule that you
have loaded, usually you don't have to mess with that unless you have
multiple molecules loaded. What error are you getting?

Best,
Chitrak.

On Sat, Feb 4, 2017 at 1:12 AM, PRITI ROY <priitii.roy_at_gmail.com> wrote:

> Hi Chitrak,
> This is working. Thank you so much for your help. I also want to see
> H-bond between two different interacting protein. What to select in
> "molecule" option in HBond plugin, this option can't be blank and whats
> about 2 "selection". I tried this for two different protein but all time
> showing error. I done this thing in different software but how it can be
> possible in vmd i don't know.
>
> Thanks again and also in advance. Sorry if any inconveniences is happen.
>
> From,
> Priti
>
>
>
>
>
> On Fri, Feb 3, 2017 at 10:15 PM, Chitrak Gupta <chgupta_at_mix.wvu.edu>
> wrote:
>
>> Hi Priti,
>>
>> The hbonds plugin allows you to define a "selection 1" and "selection 2"--001a11455678cdec1a0547be7443--