VMD-L Mailing List
From: Fatemesadat Emami (fe2_at_zips.uakron.edu)
Date: Tue Jul 17 2012 - 14:38:41 CDT
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thanks, it worked...
---------- Forwarded message ----------
From: Axel Kohlmeyer <akohlmey_at_gmail.com>
Date: Tue, Jul 17, 2012 at 3:27 PM
Subject: Re: vmd-l: periodic bonds in vmd
To: Fatemesadat Emami <fe2_at_zips.uakron.edu>
Cc: vmd-l_at_ks.uiuc.edu
On Tue, Jul 17, 2012 at 8:10 PM, Fatemesadat Emami <fe2_at_zips.uakron.edu>
wrote:
> Dear vmd users,
> I have simulated a surface (infinite with periodic bonds) with namd. When
I
> visualize it in vmd the bonds over the boundaries are shown. Is there any
> way to not visualize the periodic bonds to have a cleaner visualization?
how about generating a custom .psf file
that is missing these bonds
only for visualization purposes?
axel
> Thanks
> FSE
>
> --
> Yours Sincerely,
> Fateme Sadat Emami
> Nano Scale Laboratory
> Polymer Engineering Department
> The University of Akron
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0 International Centre for Theoretical Physics, Trieste. Italy. -- *Yours Sincerely, Fateme Sadat Emami Nano Scale Laboratory Polymer Engineering Department The University of Akron*
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