VMD-L Mailing List
From: Ian Stokes-Rees (ijstokes_at_hkl.hms.harvard.edu)
Date: Fri Aug 13 2010 - 10:30:15 CDT
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On 8/12/10 11:37 PM, Ian Stokes-Rees wrote:
>
>> If you just wanted to display atom-atom distances, this is a
>> built-in feature.
>
> That would be fine. Can you give me a hint how to do this?
I've part way figured it out, thanks to the "Comparing Two Structures"
section of the VMD User's Guide:
http://www.ks.uiuc.edu/Research/vmd/vmd-1.8.7/ug/node20.html#820
However the documentation isn't totally clear: I couldn't find an
"Object Mode" pull-down, and there is no "Atom" option directly under
the "Mouse" menu, but trial and error has allowed some progress.
The two problems I now have:
1. How do I get my bond distance to be based on the smoothing window
coordinates rather than the "raw" per-frame coordinates?
2. How do I delete incorrect bond selections, and accidental labels?
Thanks,
Ian
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- Reply: John Stone: "Re: VMD questions about animating residue distance lines and contact maps"
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