VMD-L Mailing List
From: Bennion, Brian (bennion1_at_llnl.gov)
Date: Mon Jun 17 2019 - 14:38:04 CDT
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From: Parviz Seifpanahi Shabane <sparviz_at_vt.edu>
Sent: Monday, June 17, 2019 12:10:02 PM
To: Bennion, Brian
Subject: Re: vmd-l: How to calculate water density.
I have a script which gives me the number of water molecules around the protein in a certain distance (10A), but I do not how to calculate the volume.
Best
On Mon, Jun 17, 2019 at 1:05 PM Bennion, Brian <bennion1_at_llnl.gov<mailto:bennion1_at_llnl.gov>> wrote:
What have you tried so far? What have searches of this list turned up. Are there any example in the vmd tutorials?
Brian
--- Sent from Workspace ONE Boxer<https://whatisworkspaceone.com/boxer> On June 17, 2019 at 8:40:15 AM PDT, Parviz Seifpanahi Shabane <sparviz_at_vt.edu<mailto:sparviz_at_vt.edu>> wrote: Hi All, I need to calculate densety of water in my systeam with using VMD. How should I do it? Best -- Parviz Seifpanahi Ph.D. Candidate Department of Physics Virginia Tech, Blacksburg, Va 24061 -- Parviz Seifpanahi Ph.D. Candidate Department of Physics Virginia Tech, Blacksburg, Va 24061
- Next message: Bassam Haddad: "Re: Merging two proteins"
- Previous message: Parviz Seifpanahi Shabane: "How to get box information from file.dcd."
- Maybe in reply to: Bennion, Brian: "Re: How to calculate water density."
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