From: yjcoshc_at_gmail.com
Date: Fri Nov 22 2019 - 13:23:13 CST
Hi Jiali,
You may need four independent colvar sections. For example:
colvar {
name dist1
distance {
...
}
}
colvar {
name dist2
distance {
...
}
}
Best regards,
Haochuan Chen
在 2019/11/22 下午12:59, Jiali Wang 写道:
> Dear NAMD users,
> Good afternoon, Is that possible to tracking four pair atom distances
> independently at same time and apply harmonic constant? I am trying to
> use four part of distance { }. But I found in the colvars.traj file,
> it only provides one column distance tracking results. Could some help
> me with this?
> Thank you for your time!
> Jiali
>
> colvar {
> name length
> outputAppliedForce off
>
> distance {
> group1 {
> atomNumbers 11530
> }
> group2 {
> atomNumbers 10888
> }
> }
> distance {
> group1 {
> atomNumbers 5266
> }
> group2 {
> atomNumbers 4624
> }
> }
> distance {
> group1 {
> atomNumbers 11794
> }
> group2 {
> atomNumbers 17152
> }
> }
> }
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