From: soroush ziaei (soroush.ziaei7337_at_gmail.com)
Date: Thu Jan 17 2019 - 08:23:01 CST
Dear ashkan,
The easiest way to generate psf file is to type following command lines into tk console or terminal:
# code script
package require topotools
topo retypebonds
topo guessangles
topo guessdihedrals
mol reanalyze 0
animate write psf name.psf
good luck
Sent from Mail for Windows 10
From: Ashkan Shekaari
Sent: Wednesday, January 9, 2019 10:45 PM
To: namd-l
Subject: namd-l: Graphene psf file
Dear NAMD Family,
Is VMD capable of generating the psf file for graphene just as it simply generates the related pdb file?
-- Regards, Ashkan Shekaari, Ph.D Candidate in Solid State Physics, K. N. Toosi University of Technology, Tehran, Iran -- This message has been scanned by KNTU Antispam System (E.F.A. Project) and is believed to be clean.
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