From: Chitrak Gupta (chgupta_at_mix.wvu.edu)
Date: Thu Mar 10 2016 - 11:30:44 CST
Hi Farideh,
I think what Ajasja was asking is, are you running it from the folder where
the namd2 binary exists? If not, you have two options:
1. Specify the entire path where the binary is located (something on the
lines of /us/local/bin/namd2 conf_file_name.conf )
2. Or, as Ajasja suggested, add the location of the namd binary to your
PATH variable.
Hope this helps,
Chitrak.
On Wed, Mar 9, 2016 at 8:54 AM, faride badalkhani <farideh.khamseh_at_gmail.com
> wrote:
> I put the parameter, .pdb, and .psf files in the untarred NAMD_2.11_Linux--001a114388c49f7c6b052db52c77--
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