From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Sat Oct 30 2010 - 08:31:02 CDT
sure; check the "measure" command, in particular "measure hbonds", in the
VMD user's guide
eddi
On Sat, Oct 30, 2010 at 7:17 AM, surendra jain <sk_iitkgp_at_yahoo.co.in>wrote:
> Hi,
>
> I have a protein dimer. I want to find the hydrogen bonds and salt
> bridges between the 2 protein monomers. Is it possible to do in NAMD/VMD ?
>
> Thanks,
> Surendra
>
>
-- -- ============================================================================= Eduard Schreiner Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 Phone: 217-244-4361 Fax: 217-244-6078 http://www.ks.uiuc.edu/~eschrein/ =============================================================================
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