From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Fri Apr 16 2010 - 05:29:29 CDT
Hi NAMD experts,
I am defining an rg colvar component as follows:
*gyration {
# atom group definition:
atoms {
atomsFile s1.pdb
atomsCol O
atomsColValue 2.0
}
}*
However, NAMD fails to recognize this atom group definition, and complains:
*colvars: Initializing atom group "atoms".
colvars: Error: no atoms defined for atom group "atoms".*
I could not figure out the problem here. I have used a similar module for a
reference structure in RMSD (refPositionsFile, refPositionsCol,
refPositionsColValue), and that had worked...
Some pointers would be very helpful.
Thanks,
Neelanjana
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