From: Richard Wood (rwoodphd_at_yahoo.com)
Date: Fri Oct 12 2007 - 08:52:44 CDT
Hi all,
That remark was meant to be tongue in cheek, and I hope that no one else was offended by it. That being said, to me an "expert" in a given field is someone whose name is readily recognized by everyone in the field. I'm sorry if I have a different definition of expert than the rest of you, and for that I am being punished.
Richard
Richard L. Wood, Ph. D.
University of Minnesota
Dept. of Medicinal Chemistry,
College of Pharmacy
717 Delaware St. SE
Minneapolis, MN
55414-2959
rwoodphd_at_yahoo.com
----- Original Message ----
From: Richard Wood <rwoodphd_at_yahoo.com>
To: "namd-l_at_ks.uiuc.edu" <namd-l_at_ks.uiuc.edu>
Sent: Thursday, October 11, 2007 9:03:22 PM
Subject: Re: namd-l: Large Benchmarks
Hi all,
It's funny how some of us have never heard of some of these "MD experts".
Richard
Richard L. Wood, Ph. D.
University of Minnesota
Dept. of Medicinal Chemistry,
College of Pharmacy
717 Delaware St. SE
Minneapolis, MN
55414-2959
rwoodphd_at_yahoo.com
----- Original
Message ----
From: Philip Peartree <P.Peartree_at_postgrad.manchester.ac.uk>
To: Richard Law <rlaw_at_hanyou.llnl.gov>
Cc: "namd-l_at_ks.uiuc.edu" <namd-l_at_ks.uiuc.edu>
Sent: Thursday, October 11, 2007 7:09:13 PM
Subject: Re: namd-l: Large Benchmarks
No, but I did share a lab with Richard until last week! I didn't know
he used
NAMD much. I will try with a large water box and see where I get...
Quoting Richard Law <rlaw_at_hanyou.llnl.gov>:
>
> It would actully be a better benchmark than having a protein or/and
> membrane for which the density will vary significantly depending on
> the system when what you want to be able measure is a scalable system
> for different numbers of atoms per processor. Different settings for
> your cut-offs and electrostatics will alter scaling a lot.
>
> Btw - Richard Henchman is at Manchester - he is an expert on these
> kinds of thing. Have you spoke to him?
>
> Rich.
>
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