From: Vani Krishna (vakri2002_at_yahoo.com)
Date: Tue Oct 10 2006 - 00:00:31 CDT
Hello,
I have been running MPI version of NAMD 2.6 on AMD64 cluster (Cray XD1). But I do not have any output until the run is completed, and even then, the output is flushed into .o file intead of the file I specify as output file. is there anyway to force flush the output at some regular intervals?
Here is my PBS submission script:
#!/bin/sh
#PBS -l nodes=2:ppn=4
#PBS -l walltime=72:00:00
#PBS -N test
#PBS -q work
#PBS
#
##################################################################
#CONFIG: change this
jobcfg=test.conf
jobout=test.out
# use submit directory
#jobdir=${PBS_O_WORKDIR}
# alt. set explicite dir
#END CONFIG
##################################################################
mpiexec /home/vani/NAMD-2.6-Source/NAMD_2.6_Source-MPI-linux/Linux-amd64-MPI/namd2 $jobcfg > $jobout
------------------------------------------------------------------------------------------------------------------
---------------------------------
How low will we go? Check out Yahoo! Messenger’s low PC-to-Phone call rates.
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:44:03 CST