From: Anahita Tafvizi (atafvizi_at_fas.harvard.edu)
Date: Sun Sep 10 2006 - 12:51:46 CDT
Dear NAMD users,
I have a question and I appreciate if anyone can answer:
In using ABF method , if one uses the reaction coordinate "distance-com " ,
defining two sets of atoms will consider the distance between them ,but does
it also imply a direction in which sampling occurs to also be the vector
between the two center of masses? or does the system sampled in different
directions?
Thanks a lot,
Anahita
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