From: bo baker (bo.bybaker_at_gmail.com)
Date: Wed Aug 17 2005 - 20:09:43 CDT
Hello,
Thanks all of you for being help me on this installation problem.
I tried the way as Jerry suggested. I install the 'vacpp' under my
home directory (i.e: /Users/bo), and the 'namd2' is in the directory
of ' /Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC'. Then add the path to
where namd2. Here is how I did:
---- [mriv209-01:~] bo% setenv DYLD_LIBRARY_PATH$DYLD_LIBRARY_PATH\:/Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC/ ---- But I got the message saying; --- tcsh: DYLD_LIBRARY_PATH: Undefined variable ---- I am not good at the unix system, and confused on how to define the DYLD. Do I do something wrong? Can you help me to fix this probelm? According to vaccp instruction, one needs to deinstall any XL C++ beta or evaluation run-time packages before installing this run-time environment. And I don't know how do this. Does this cause the above errors, or just I didn't set the path in the right way? Your advices will be very appreciated. Bo On 8/17/05, Jerry Ebalunode <jebalunode_at_uh.edu> wrote: > If you have root privileges, place the runtime library called > "libibmc++.A.dylib" where namd2 expects to find it i.e. > "/opt/ibmcmp/lib/libibmc++.A.dylib" > > Otherwise add the path where you installed your namd2 to DYLD_LIBRARY_PATH > variable > > i.e. assuming your home directory is /Users/baker and you installed > namd2.6b1 in /Users/baker/bin; to set the dylib path to see your > libibmc++.A.dylib present in /Users/baker/bin > > For bash shell run > export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/Users/baker/bin > > For csh/tcsh shell run > setenv DYLD_LIBRARY_PATH $DYLD_LIBRARY_PATH\:/Users/baker/bin > > > -----Original Message----- > From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf > Of bo baker > Sent: Wednesday, August 17, 2005 12:30 PM > To: namd-l_at_ks.uiuc.edu > Subject: Re: namd-l: errno = 2 > > Hello, NAMD: > > I install the NAMD_2.6b1 into a Mac computer (Mac OSX 10.3.9). And I > downloaded the runtime library into the same directory as 'namd2' I > try > to run 'namd2'. Here is what I got: > > ------ > > [mriv209-01:~/MD/NAMD/NAMD_2.6b1_MacOSX-PPC] bo% > /Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC/namd2 ubq_wb_eq.conf > > unq_wb_eq.log > > dyld: /Users/bo/MD/NAMD/NAMD_2.6b1_MacOSX-PPC/namd2 can't open > library: /opt/ibmcmp/lib/libibmc++.A.dylib (No such file or > directory, errno = 2) > Trace/BPT trap > > ------ > > The 'ubq_wb_eq.conf' is from 'namd-tutorial-files' downloaded from > NAMD website. I have the 'ubq_wb.pdb' and 'ubq_wb.psf' files at the > same directory. The runtime library is shown as 'opt' and in the same > directory as others. It seems that I don't have the NAMD installed > properly. The computer is in mutiple users, and I am not the > adminstrator. > > Thanks for any comments to fix this problem. > > Bo > >
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