Re: Compiling NAMD on IA64 cluter

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Wed Nov 03 2004 - 10:39:23 CST

hello,

In the email you sent below, I see a bunch of random characters. Is this
what you see on your terminal as well?

The critical error here is the "-lgm" switch that linker cannot parse.
Somewhere the path to the gm library is not correctly implemented in NAMD.
Unfortunately I am clueless about compiling myrinet versions of namd.

Gengbin can you say something here?

Brian

On Wed, 3 Nov 2004, li wrote:

> Replyed From: li <zlee_at_ustc.edu>
>
> Hi,Brian :
> I have successed in building charm++ using ecc with gm (gm1.6.5)option,and the megatest is also ok , but finnally failed with infomation like below when compiling NAMD:
>
> ...........
> ld: cannot find -lgm
> Fatal Error by charmc in directory
> /home/public/compchem/namd/NAMD_2.5_Source/Linux-ia64-GM-ecc
> Command ecpc -L/usr/gm/lib -O2 -ftz
> -L/home/public/compchem/namd/tcl/linux/lib -L/home/public/compchem/tcl/lib
> -L/home/public/compchem/namd/fftw/linuxia64/lib -L/fftw-linux/lib
> -L/home/public/compchem/namd/plugins/LINUXIA64
> -L/home/public/compchem/namd/plugins/LINUXIA64/molfile
> -L/home/public/compchem/plugins/LINUXIA64
> -L/home/public/compchem/plugins/LINUXIA64/molfile
> -I/hooõ”½ĮՉ±„Œ½½µĮ”•“½¹…µ½95|ČøÕ}M½Õɍ”½”…É““Ōøą½¹•Šµ±„¹Õąµ„„ŲŠµ“µ•Œ½„¹±Õ‘”4(µ¼¹…µČ4(4(øøøøøøøøøøøøøø4(4)½‰Ø½Łµ‘Ķ½¬¹¼½‰Ø½Į…É“¹¼½‰Ø½„µ¹¼µ½‘Õ±•„¹„Š¹¼€µ±µ½‘Õ±•9•„”‰½É14(µ±µ½‘Õ±•½µµ±„ˆ4(½”½µ”½ĮՉ±„Œ½½µĮ”•“½¹…µ½95|ČøÕ}M½Õɍ”½”…É““Ōøą½¹•Šµ±„¹Õąµ„„ŲŠµ“µ•Œ½‰„ø¼øø½±„ˆ½±„‰µ•µ½É䵑•™…Õ±Š¹¼4(½”½µ”½ĮՉ±„Œ½½µĮ”•“½¹…µ½95|ČøÕ}M½Õɍ”½”…É““Ōøą½¹•Šµ±„¹Õąµ„„ŲŠµ“µ•Œ½‰„ø¼øø½±„ˆ½±„‰Ń”ɕ…‘Ģµ‘•™…Õ±Š¹¼4(µ±¬€µ±½¹ŲµĮ±ÕĢµä€µ±½¹Ųµ½É”€µ±½¹ŲµÕŃ„°€µ±“€µ±­ÅŠ€µ±“€µ±‘°€µ±č€µ±“4(µ±“€µ±Ń°ąøĢ€µ±‘°€µ±Ķə™Ń܀µ±Ķ™™Ń܀µ±µ½±™„±•}Į±Õ„ø€µ±“4(µ±µ½‘Õ±•9•„”‰½É1€µ±µ½‘Õ±•½µµ±„ˆÉ•ŃÕɹ••ÉÉ½Č½‘”€Ä4)”…ɵŒ•į„Ń„¹œøøø4)µ…­”č€ØØ؁m¹…µÉtÉÉ½Č€Ä4(4)]½Õ±å½ŌĮ±•…Ķ”„Ł”µ”Ķ½µ””„¹ŃĢü€4)Q”…¹¬å½ŌŁ•É䁵Ս „4(4(4(4(4(4(4(4(4(4(4(4(4(4(4(4(?Š Š Š Š Š Š Š¢
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> > >
> > >
> > >
> >
> > *****************************************************************
> > **Brian Bennion, Ph.D. **
> > **Computational and Systems Biology Division **
> > **Biology and Biotechnology Research Program **
> > **Lawrence Livermore National Laboratory **
> > **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> > **7000 East Avenue phone: (925) 422-5722 **
> > **Livermore, CA 94550 fax: (925) 424-6605 **
> > *****************************************************************
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*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
*****************************************************************

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