From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Mon Oct 27 2003 - 15:14:57 CST
You can make glycerol fairly easily from the lipid section of the
top_all27_prot_lipid.inp file. Cut off the phosphocholine from the GPC
residue.
Brian
On Tue, 28 Oct 2003, himanshu chandola wrote:
> Hello everyone,
> thanks for the help . the problem got resolved - i was using
> some other param file.
> There's another problem --: the parameters for glycerol - GOL in the pdb
> file. Does any parameter file
> have them or they need to be generated arbitrarily.
> thanks again,
>
> himanshu
> ---------------------------------
> himanshu chandola
> iit delhi
>
> Neo: The problem is choice
>
>
>
> On Mon, 27 Oct 2003, Cosmin ROMAN wrote:
>
> > On Tuesday 28 October 2003 01:45, himanshu chandola wrote:
> > > Does anybody has any idea about charmm parameters for ADP or if not idea
> > > then how can i just let psfgen get some arbitrary values just for ADP .
> > >
> > > Neo: The problem is choice
> >
> > Dear Himanshu,
> >
> > Brian is right, you have the ADP in the "top_all27_prot_na.inp" prepared for
> > you. If you search on Google "top_all27_prot_na.inp" you'll have no problem
> > finding it. However if you can't find it write me outside the forum and I'll
> > send it to you.
> >
> > Regards,
> > Cosmin.
> >
> >
>
-- ***************************************************************** **Brian Bennion, Ph.D. ** **Computational and Systems Biology Division ** **Biology and Biotechnology Research Program ** **Lawrence Livermore National Laboratory ** **P.O. Box 808, L-448 bennion1_at_llnl.gov ** **7000 East Avenue phone: (925) 422-5722 ** **Livermore, CA 94550 fax: (925) 422-6605 ** *****************************************************************
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