New Page 1

New Job

Start a Job: New Job: For Project: Actin

Step 1:	Select a job type:
			Queuepred button grayed out if doesn't apply

Step 2:	Select an account for this job:	BioCoRE will gather queue info when you log in for display here

	Status of your selected account: Job id Name User Time Use S Queue ---------------- ---------------- ---------------- -------- - ----- 34190.giant run sanderso 0 H standard 34191.giant run sanderso 0 H standard 34197.giant run sanderso 0 H standard 34198.giant run sanderso 0 H standard 34319.giant run sanderso 0 H standard 34320.giant run sanderso 0 H standard 34321.giant run sanderso 0 H standard 34327.giant re.r1.buoy.dsm sabdelwa 139:51:2 R standard 34329.giant C0.16 pmarrone 67:47:52 R standard 34331.giant dev.96 esewall 0 Q standard 34332.giant phSolver snagrath 0 Q standard 34333.giant phSolver snagrath 0 Q standard 34346.giant apoa1 rkufrin 0 Q standard 34347.giant apoa1 rkufrin 0 Q standard 34348.giant SPC_large schiu 0 Q standard 34349.giant notexd lkwagner 0 Q standard 34350.giant C0.32 pmarrone 0 Q standard 34351.giant CHXOL schiu 58:58:44 R standard 34352.giant exd lkwagner 0 Q standard 34353.giant re.r3.dsm sabdelwa 0 Q standard 34354.giant re.45stag.dsm sabdelwa 0 Q standard 34365.giant a1f24r3.re500 wipatric 0 Q standard 34387.giant re.20k.chan rkufrin 00:52:06 R standard




Step 3:			<--Rest of page grayed out until button pushed

Step 4:	Enter the information required to run this job type on the selected account:
	A name for this job:
	List this job with these other simulations*:
	Working directory on the remote machine:
	NAMD executable path:
	NAMD input filename:
	Number of processors:
	Length of time for job to run:	Hours: Minutes: Seconds:
	Notes about this job:
	E-mail me about job status**:		Mails when job starts/stops or if problem


Step 5:			Filenames and paths below are examples only.

	Input files selected for job:	BioFS source of file:
	1. samplefilename.namd	/Actin/jobs/sampledir/sampledir/
	2. samplefilename.min	/Actin/jobs/sampledir/sampledir/
	3. samplefilename.psf	/Actin/jobs/sampledir/sampledir/
	4. samplefilename.pro	/Actin/jobs/sampledir/sampledir/

	Output files expected from job:	BioFS destination for file:
	1. samplefilename.out	/Actin/jobs/sampledir/sampledir/
	2. samplefilename.coord	/Actin/jobs/sampledir/sampledir/
	3. samplefilename.rel	/Actin/jobs/sampledir/sampledir/
	4. samplefilename.dcd	/Actin/jobs/sampledir/sampledir/

Step 6:

* See 'View Jobs: For this project' to add more names of groups of simulations to the drop-down menu.

**Users checking the e-mail box will receive a message when the job starts, concludes, or if there is a problem with the job. The e-mail will go to your registration e-mail address, or you can change e-mail preferences here.

***Can edit job script from job preview page if needed.