Based on a Pending Job
 

Start a Job: Sequential Jobs: For project: Actin

Allows users to set up a job based on a job that has already been set up, but is not yet running.  You can use this tool iteratively, to set up jobs that are based on a sequence of pre-defined pending jobs.

Step 1:  Select a Job from:   this project    all projects :

 

Step 2:  Select a pending job from the table below.

  Name Account SimGroup  Project Type Status Last Update Details
homedirectory3.1 uiucbdqathlonshort Trial-1 Actin NAMD Pending Mon Oct 14 14:52:53 CDT 2001

homedirectory3 uiucbdqathlonshort Trial-1 Actin Generic Pending Thu Apr 19 10:55:16 CDT 2001

homedirectory2.9 uiucbdqathlonshort Mod-1 Actin Generic Pending Wed Apr 18 12:21:45 CDT 2001

homedirectory2.9a uiucbdqathlonshort Mod-2 Actin NAMD Pending Tue Apr 17 10:55:16 CDT 2001

<--Prior 4 jobs

Table length:  Display jobs in table

Next 4 jobs -->

 

Step 3:  Select an account for this job:

 

 

Step 4: Enter the information required to run this job type on the selected account:
A name for this job:
  List this job with these other simulations*:  
Working directory on the remote machine:
NAMD executable path:
NAMD input filename:
Number of processors:
Length of time for job to run: Hours:   Minutes:    Seconds:
Notes about this job:
  E-mail me about job status: Mails when job starts, stops, or if problem
       

Step 5:  Click the button below to generate a list of files from the prior job.
Note: areas below grayed out until this button pushed.

 

Step 6:  Click the button below to add any additional input or output files to the list of files for the job.
  Filenames and paths below are examples only.

 

Step 7:  Modify files as needed by clicking on the filename.
    
Input files selected for job: BioFS source of file:
1. samplefilename.namd /Actin/jobs/sampledir/sampledir/
2. samplefilename.min /Actin/jobs/sampledir/sampledir/
3. samplefilename.psf /Actin/jobs/sampledir/sampledir/
4. samplefilename.pro /Actin/jobs/sampledir/sampledir/
     
Output files expected from job: BioFS destination for file:
1. samplefilename.out /Actin/jobs/sampledir/sampledir/
2. samplefilename.coord /Actin/jobs/sampledir/sampledir/
3. samplefilename.rel /Actin/jobs/sampledir/sampledir/
4. samplefilename.dcd /Actin/jobs/sampledir/sampledir/

 
Step 8:
 

 


* See 'View Jobs:  For this project' to add more names of groups of simulations to the drop-down menu.

**Can edit job script from job preview page if needed.