From: Hrishikesh Dhondge (hbdhondge_at_gmail.com)
Date: Mon Apr 11 2022 - 04:26:44 CDT
Hello again,
Sorry for the inconvenience caused. The nonnative functionality has been
already added. I was confused about generating the same file with different
options.
When the *savenonnative* option is provided the *non-native* contacts are
written along with the *native contacts. *
Without the *savenonnative* option, the *nativecontacts* command in cpptraj
saves only native contact information.
Have a nice day!
On Mon, Apr 11, 2022 at 10:33 AM Hrishikesh Dhondge <hbdhondge_at_gmail.com>
wrote:
> Hello everyone,
>
> I am trying to get native and nonnative contacts from a trajectory using
> nativecontacts command from cpptraj. But both of these sets are similar. So
> I tried to look if anyone else faced the same problem and I found this
> thread in the archive.
> https://urldefense.com/v3/__http://archive.ambermd.org/201603/0509.html__;!!DZ3fjg!vpBg9uVleHeUNn3BSTrCYVPL6CFI4kduJzr4QPha9vWAk-IWlfFMmbotPjzTrbd9VQ$
> <https://urldefense.com/v3/__http://archive.ambermd.org/201603/0509.html__;!!DZ3fjg!s3wI28m06pqdm3s3MOJHO9wxH1qhJyC1bnnP05LF_TVOsx1vAdo6V-LlUYXOZ9WJ-Q$>
>
>
> Is it still the same or is it fixed now?
>
> Thanks in advance and have a nice day!
>
> --
> With regards
> Hrishikesh Dhondge
> PhD student,
> LORIA - INRIA Nancy
>
-- With regards Hrishikesh Dhondge PhD student, LORIA - INRIA Nancy
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